GgaINT0020621 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:634629-635363:+
Coord C1 exon
chr12:634629-634778
Coord A exon
chr12:634779-635258
Coord C2 exon
chr12:635259-635363
Length
480 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GTGGTGTTCCTGTCCCTCAGAGT
3' ss Score
9.4
Exon sequences
Seq C1 exon
CCTGCCCGGGGGGGCTTGAGGCGCCGTGTGGGAACCGTGGGACCTGCGATGACAGTATCAGTGGCTCGGGGCGGTGCAACTGCAGCCAGGCCTTCATCGGGACCAGCTGTGAGCTGTGCGCACCGGGCAGATATGGGCCCCAGTGCCGAG
Seq A exon
GTATGGGGAGCCCGGGGAGGCTGCACAGTGCCTCTCTGCAGAGGTGGCTGCAGGATGGAGGGGTTGGCTGGGTGAGCACAGGAATCAGTGCGGAACACCTGCACCAGTGCAGTGACATGCAGGGGATGTACAGGGCTCGCTGCAGGCCAGCTGGTGCTCTGGCCATGGTTTCTAGAAGGCCCTGGGTTCAGTGGTTCCTCCTGGTTTGTCAGGCTGGGAGCCTGGTGGGGCAGAGATCCTGGGGTGCATCTGGCACAGGGAGGGAAAGGAGCCCTGAGTAGAGGAGCTCATGTGTCCCCTGGAACAGAATAGGGCCGAGCGATGGGGGCTTTGGGTGGTCCTCTCCTGTGTTGGAATGTGTGGAGCAGACAGCTGGGTCTGGAGGCAGTGGGACGTGTGTGGTGTGCGCTGCCACACTGCTGTCCGTGGCCCTTCCTGCCACCACAGCAGAGCAGTGACAGTGGTGTTCCTGTCCCTCAG
Seq C2 exon
AGTGTAATTGCACTGAGCATGGCGTGTGCAATGGAGGGCTGCACGGCGATGGCTTTTGCTTCTGTGCCGAGGGCTGGACTGGAGAGCGCTGCGAAGTCCGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGTGGGACCTGCGAT
R:
CAGACGGACTTCGCAGCG
Band lengths:
223-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]