HsaINT0160006 @ hg19
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:18628]
Coordinates
chr3:52555377-52555716:+
Coord C1 exon
chr3:52555377-52555526
Coord A exon
chr3:52555527-52555611
Coord C2 exon
chr3:52555612-52555716
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CTGCCTGTCCCTCTCCCCAGCCT
3' ss Score
10.17
Exon sequences
Seq C1 exon
CTTGCCCTGGCGGCCCCAGCAGCCCTTGTAGTGACCGTGGCGTGTGCATGGACGGCATGAGTGGCAGTGGGCAGTGTCTGTGCCGTTCAGGTTTTGCTGGGACAGCCTGTGAACTCTGTGCTCCTGGTGCCTTTGGGCCCCATTGTCAAG
Seq A exon
GTGGGCCATCCCTGCCTGCCCCACGGCCCGATTCCTTTGGCCCTTGTGGGCCAATCTTTATCTTCCTGCCTGTCCCTCTCCCCAG
Seq C2 exon
CCTGCCGCTGCACTGTGCATGGCCGCTGTGATGAGGGCCTTGGGGGCTCTGGCTCCTGCTTCTGTGATGAAGGCTGGACTGGGCCACGCTGTGAGGTGCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327-STAB1:NM_015136:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATGGACGGCATGAGTG
R:
CATCACAGAAGCAGGAGCCAG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)