GgaINT1026503 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:634077-634487:+
Coord C1 exon
chr12:634077-634184
Coord A exon
chr12:634185-634293
Coord C2 exon
chr12:634294-634487
Length
109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TAACACTATTTTCCATGCAGCCA
3' ss Score
6.94
Exon sequences
Seq C1 exon
CCGTGAAGCCCACCTGCTCACCGCCGTGCCACCCCCAGGCCTCCTGCCGCGCTGGCAACCTCTGTGAATGTGACATGCACTATGAAGGGGATGGCAGAGCCTGCACAG
Seq A exon
GTGGGGGCCGTGGGGTCAGGGCAGCTCCGTGGGGGGTAGGTCATGCTGGGGGCGGTGCACAGGGCAGGAAAACGGTGCTCCAGTGATGGTAACACTATTTTCCATGCAG
Seq C2 exon
CCATTGACATGTGTAGCCAGGACAACGGTGGCTGTGCCACGCATGCTGCCTGCACGCAGCTTGGTGTCAACGTCTCCTGCACCTGTGCTGCGGGGTACTGGGGTGACGGCTACGTCTGCGAGCCCATTGACCGCTGCGCAGATGGCAGGAATGGGGACTGCAGCGAGCATGCACACTGCATCAGCACCGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCCCACCTGCTCAC
R:
ATTCCTGCCATCTGCGCAG
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]