MmuINT0153374 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31954449-31954826:-
Coord C1 exon
chr14:31954719-31954826
Coord A exon
chr14:31954643-31954718
Coord C2 exon
chr14:31954449-31954642
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CACTTCTTCCTTGCCCCCAGTGG
3' ss Score
9.09
Exon sequences
Seq C1 exon
AGTTGCAGCCTGTGTGCACCCCACCGTGTGCACCCCAGGCCGTGTGCCGTCTGGGCAACAGCTGTGAGTGCAGCCTGGGCTATGAAGGGGATGGCCGTGTGTGCACAG
Seq A exon
GTAAGCCATGACTTGCAGGTAGGATGCCCTGGATCCGCCCTAGGACCTGGCTCAACCACTTCTTCCTTGCCCCCAG
Seq C2 exon
TGGCAGACCTGTGCCAGAAGGGGCATGGTGGCTGCAGTAAGCATGCCAACTGCAGCCAGGTGGGGACAGTGGTCACTTGCACCTGCCTGCCTGACTATGAGGGTGACGGTTGGAGCTGCCGAGCTCGAGACCCCTGCTTGGATGGCCACCGTGGAGGTTGCAGCGAGCACGCTGACTGCCTCAATACCGGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:58
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAACAGCTGTGAGTG
R:
ACCGTCACCCTCATAGTCAGG
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: