BtaINT0141805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48886396-48886774:-
Coord C1 exon
chr22:48886667-48886774
Coord A exon
chr22:48886590-48886666
Coord C2 exon
chr22:48886396-48886589
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCTCCTCCCCACCTCCAGTGG
3' ss Score
8.8
Exon sequences
Seq C1 exon
AGCTGCAGCCTGTGTGTGCTCCGCCCTGCGCACCCCAGGCCGTGTGCCGTGCTGGCAACAGCTGTGAGTGCAGCCTGGGCTACGAAGGGGACGGCCGCACGTGCACAG
Seq A exon
GTGAGCAGGGGTGGAGCGCCCACTCCCCTCCCATCCCCTCCCGTTACCTGGTCCAACACCCTCCTCCCCACCTCCAG
Seq C2 exon
TGGTGAACCTGTGCCAGGATGGGCGTGGTGGCTGCAGCGAGCATGCCAACTGCAGCCAGGCAGGCACAGCGGTCACCTGCATCTGCTGGCCAGACTACGAGGGCGATGGCTGGAGCTGCCGGGCCCGCAACCCCTGTGAGGATGGCCTCCGCGGGGGCTGCAGTGAGCACGCCGACTGCCTGAACACTGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAACAGCTGTGAGTGC
R:
AGCCATCGCCCTCGTAGTC
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]