RnoINT0144322 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7222902-7223279:-
Coord C1 exon
chr16:7223172-7223279
Coord A exon
chr16:7223096-7223171
Coord C2 exon
chr16:7222902-7223095
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CACTTCTTCCTTGCCCCCAGTGG
3' ss Score
9.09
Exon sequences
Seq C1 exon
AGTTGCAGCCCGTGTGCACCCCGCCCTGTGCACCCCAGGCCGTGTGCCGTGTGGGCAACAGCTGTGAGTGCAGCCTGGGCTATGAAGGGGACGGCCGTGTGTGCACAG
Seq A exon
GTAAGCCGTGACTTAGCAGGTAGGATGCCCTAGACCACGCTAGGACCTGGCTCAACCACTTCTTCCTTGCCCCCAG
Seq C2 exon
TGGCAGACCTGTGCCAGAAGGGGCATGGTGGCTGCAGTAAGCACGCCAACTGCAGCCAGGTGGGGACAGTGGTCACCTGTACCTGCCTGCCTGCCTATGAGGGTGACGGTTGGAGTTGCCGAGCTCGCAACCCCTGCTTGGATGGCCACCGTGGAGGTTGCAGTGAGCATGCCGACTGCTTTAACACCGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCAACAGCTGTGAGTG
R:
TCCAACCGTCACCCTCATAGG
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]