MmuINT1032286 @ mm10
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31141263-31141640:-
Coord C1 exon
chr14:31141533-31141640
Coord A exon
chr14:31141457-31141532
Coord C2 exon
chr14:31141263-31141456
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CACTTCTTCCTTGCCCCCAGTGG
3' ss Score
9.09
Exon sequences
Seq C1 exon
AGTTGCAGCCTGTGTGCACCCCACCGTGTGCACCCCAGGCCGTGTGCCGTCTGGGCAACAGCTGTGAGTGCAGCCTGGGCTATGAAGGGGATGGCCGTGTGTGCACAG
Seq A exon
GTAAGCCATGACTTGCAGGTAGGATGCCCTGGATCCGCCCTAGGACCTGGCTCAACCACTTCTTCCTTGCCCCCAG
Seq C2 exon
TGGCAGACCTGTGCCAGAAGGGGCATGGTGGCTGCAGTAAGCATGCCAACTGCAGCCAGGTGGGGACAGTGGTCACTTGCACCTGCCTGCCTGACTATGAGGGTGACGGTTGGAGCTGCCGAGCTCGAGACCCCTGCTTGGATGGCCACCGTGGAGGTTGCAGCGAGCACGCTGACTGCCTCAATACCGGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286:ENSMUST00000036618:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAACAGCTGTGAGTG
R:
ACCGTCACCCTCATAGTCAGG
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types