DreINT0156720 @ danRer10
Intron Retention
Gene
ENSDARG00000076484 | stab1
Description
stabilin 1 [Source:ZFIN;Acc:ZDB-GENE-050208-554]
Coordinates
chr22:10263342-10267003:-
Coord C1 exon
chr22:10266896-10267003
Coord A exon
chr22:10263536-10266895
Coord C2 exon
chr22:10263342-10263535
Length
3360 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATCACATTTTGTTTTTGCAGCTC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AAGTCAAGTCGATCTGTTCTCCCGCATGTGATCTGAATGCAGTTTGTCTTCCTGAAAATCAGTGCGAGTGTTTGGAGCCCTATGAAGGAAATGGCATCAACTGCACAG
Seq A exon
GTTGGTTATGATATGAATAACATCTATTGGATTGCATTAGCTGAGGGTAAGATGCCGATACTTTAACTCAAGTAGTCTGTTGGCAATTTTATTCATACAAAATACACAACCTGACAAAAGTCTTGTCATTGATACCAGTTGTAAGAGCAACAAATATTAACTTGACTTCTGGTTGATCACTTGGAAAAGTGACAGAAGGTAGATTTTTTTCATATGAACCATCTGTTGAACTGCGAACCGATTGTAAGGTCCACCCAGTTGGTCCAATGCCGGTGTCCACTGGTGGATGAAGGTTCAATGCCTGTTCGGTCTTTCCAGTGCACAATGTTGATTTACCTTAAATTTAACTCATATCTGACTCCAATTTTAGTATGAGGTGGTTTAGAATATGAATATATTTATATTTTGTTTTATCTGACTCCAATCATAAAACATTAAAAGATTATATCAATATTTAATTTAGATAAATGTTTGAACCTTTTGTCTTCACTAACTATCACATCCGTTCATTCGGGTGCTCATGTTGCTCAGAGAAATCGCCCCGGCCGAAGGCGTCCCGCACGATCACACTCTGGTCAGTCTTGAATATTAAACAGAGGTAATTGACTAATACTTTAGATGGCCGCTACTAGCGCGCTCGTTCTAAAGTACTTTTAGTTAGTCCCGCTTAGATGTACACCCTTGAGTTAAGACAATATCATTTCTAATTAGAGGTTAGGGCATTATTATAAATGTACCCGACTACTGGACTCTATAGTAACTTTGGTTTTCACCAAGCCCATGGTTTCCCATATGAACTTAATTTAGAATAATATTACCTTCAAACAAAGGTCGGGTACCCAATCTAGGTTAGCCGTGCAACTCCTTGTTGTCCTAGACGGAAGTTAACGCCCTTTCCACCTAAGTACACTTGAATCAAAATCAAGAGTCAGTCGGATCTCTAAAACACAATTAGTGTGCCCAATGCTCCATCTCAACTGGATTCTAGTCCGTCTACTGACCTGACGCAAGACGTGCGGAAACGAGGATACAGCGTAATCTACTAGAACTAATAATTACAGAGTAAGCAAAATATGTTTAAACATAACAATTTATTAGTCAGGTAAATGTGTATTATGCCAATTCAATCAGTCAGTTCATAAACGATCAATACAAAACATCAAATTATCAAAGATAAATCCAAGATGAAAAGATGTATACCTGACTTTAAATTATACATAACTTGGAGCGTAAGCTCTATGTTACGGGCTGATCTGGGTAAGCAGAATCGCCCTGAACACTTTTCAAACCTTCCCTTAAGTAATCCAAGAATCCCCTCAAGGAAAGGGGTGTGTGAATCATTTGCATTTAGTCTAAGAGTATCTCCATGTAGGAAACTCACACCCTTCACAGTGGTTCAAAAGATGCCTGAAGTTATATATTTACTGTTTTGATTATGTCTATTTCTGAGGGAATGAGACCATTGTACCAGTCGCACTGAGACATTTCAAATGATATCAAACATGATAGATAAAGTCACTTGGGTTAATTTAGAACATTCAGACTTTGAAATGACCATATATGTGAGTTGGGGTGGTTGAAGTCGAGTTTCAGGGGATTCAAATGTAAATGTAGCGGGAGCTGGTTCTTTCCCGCATTCCCACCTGCTGGGTTGTGGAGCCAATTGTCTCCGTTTTCGGCTCATGTTTGAATTGGCAAAGACATCAAAGTATTTGTGATATATCACGCCTTACATGATCATCACAAACACTGCAGAAGACCTACTGGAACATGCATGGACCCAAGATTCTCACAGAAATTAGTCAAGTTTGATGAAGGCTAAAATCATGGTTTGGTGTTACATTCAGTATGAGGGCATATGAGAGATCTAGATGGCAACATCAACAGCCTGAGGCATCAAGACATTTGTGCTGCCCATTACATTACAAACCACAGGAGAGGGCAAATTCTTCAGCAGGATAGTGCTCTTCCTTTACTTCAGCCTCCACATCAAAGTTCCTGAAAGTAAAAAAAAGTCAAGGTCCTCCAGGATTGGCCAGCCCAGTCACCAGATATGAACACTATTGAGCATGTCTGGGGTAAGATGAAGCAGGAGGCATTGAAGATGAATCCAAAGAATCTCAATGAACTTTGGGAGTCCTGCAGGAACGCTTTCTTTGCCATTCCAGATGCCTTTATTAATAAGATATTTAAGTCCTTGCAGAGATGAACGGATGTAGTCGTCCAAGCTCATGGGAGTCATACACAATATTCATTCTTTTTCCACTGCACCATGACTTTATATTCTGAAATGTACATTATTTCTGTTAAGTGACAAGACTTTGTCTAAGCAAATCAGACCTTACTGTCCTAATTAAATCATTAAAAATCAAGACATGAACATATTTTATTTTGGTAAAATAAGTGTAATCTTGAGGCCTTTGTCTTTCATATGAGCCACTTCCGATAGCAAATTACCAACTAATATATTAATAGAACTATACAACTAATCAATATAATATATTTGTAATAAATACAGTAATTTTTAGATATTTATATAGTAAATCTGAAATTTTTGGTTGTTTCACCAAATGTTTGGTGTTATATATAATTAATTATATATAAATAATATATTATTTTTGAGCCTTGGGAATTCTTGAGCAAATTTATCTTGATTAAGTAATATTCAGATATTTCTCAATTAAATCTGACTTCTTTTTTGGTTGTTTCACCCAAAGTTGAGTAAATATTTTTGTGCTTTTTCAAATTTACTTTATTTATTTTTTTTAGAATTTATTTTGACATTTATTGGTTGTTTTAAGCAAAAACATACTAAGGTACACATTAAATGGACTTAAATCGTAAATATCTTAAAGCAATTTTTCTTTTCAAGTGAATGTTTTCTGATTTAGTAATTTTTGATGTTTATATTTACAAACAACACTCAATAATTAAAGTGCTGTATACATTTTCAGTCTTATTGTAAATTATTTCCAATAAAAACAATTAAATCTGGTGTTACATTTATGTGAATTGTTATTTACAGGGTTAGTTCACCCAAAATTTCAATTCTGCTCATCCTTTAATTGTTTCAAAACCTTTGTGAATTTCTTCCTTCTGTTCAACACTGAAGAAGATATTTTGAAAAGTGTTGTAAAACTGTAATCATTGACTTCCAAAATATTTGGAAGTCAACGGTTACAGGTGTCCAACATTCTTCAAAATATCTTGTTTTGGGTTTAATAGAAGAATCTTATAAAGGTTTTGAACCACTTAAAGAAGAATACATTTTCTTTTCTTTTTCTTATTTTGGCTGAACTCTTGCTTTAATTTTACACATTCACCAGAAGAATTCATAGAAATCACATTTTGTTTTTGCAG
Seq C2 exon
CTCCGGATCTTTGCAGTGAATATAACGGAGGTTGCCATGAAGAAGCCGACTGTATGCAGTCAGGTATCAACATTACCTGTTCCTGTCAGACGGGATACTCCGGAGACGGACATGTTTGCGAGCCTATTAACCGATGTGTAGAGGAGGCAAATGGCGGCTGCAGCGATTTCGCAAAATGTATTTTCACCGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076484:ENSDART00000092050:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]