BtaINT0141803 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48886878-48887216:-
Coord C1 exon
chr22:48887067-48887216
Coord A exon
chr22:48886983-48887066
Coord C2 exon
chr22:48886878-48886982
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTGCCTGTCCCTCTCCCCAGCCT
3' ss Score
10.17
Exon sequences
Seq C1 exon
CTTGCCCTGGCGGCGCCAGCAGCCCCTGTAACCAGCGCGGCTCGTGCATGGACGGCATGAGCGGCAGCGGGGAGTGCAGGTGCCACACGCGCTTCGCCGGCACGGCCTGTGAGCTCTGTGCCCCGGGAGCCTTTGGGCCCCTGTGCCAAG
Seq A exon
GTAGGCTGTGCTGCCCGGCCCTGCCCTGCTCCCTGACCCCCCTGGCCCGTGTGCCAACACCATCCTGCCTGTCCCTCTCCCCAG
Seq C2 exon
CCTGCAACTGTACCTCCCACGGCCGCTGTGACGAGGGCCTGGGGGGCTCCGGCTCCTGCTTCTGTGATGAGGGCTGGACGGGGCCACGCTGTGAGGTGCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGCATGGACGGCATG
R:
CTCATCACAGAAGCAGGAGCC
Band lengths:
181-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]