GgaINT0021019 @ galGal3
Intron Retention
Gene
ENSGALG00000005400 | CACNA2D3
Description
NA
Coordinates
chr12:7871946-7873841:+
Coord C1 exon
chr12:7871946-7872007
Coord A exon
chr12:7872008-7873773
Coord C2 exon
chr12:7873774-7873841
Length
1766 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TGCTCTTTTTCTCTGCACAGTTT
3' ss Score
9.28
Exon sequences
Seq C1 exon
AAACGGGTATTGGTGATGACAAATGACTACTATTATACAGACATCAAGGGTACTCCATTCAG
Seq A exon
GTAGAGCCGACCATAATAAATGGCCATTTCATCAGACTCATTGGACTTGCATTTGTACAGAGCTTGTGAACTCATTAAAAGCTCATCAGCAAAAGCTGACAATAAAATATCCCTGGACAATGCTGAAAATAGCAAGGGAAAGGAGCTTACTAGCATTCCTTTCAGCTTTTCCAGGGATGGAAAGTTTGTGCAAGCTCACACAGGCAAATTTTCAGTGTTTGTCATGGCTTACGTTTCATTAAAAAAATATTCAGTTGAGGTTTACGTTGAACGAAAGGCTTTCGCAAGTACTTAGAGAGCTATAAATACTGTAATCCATTTAAGTAATTACATATTGAGCCTCATTTTGATTTTTTTCAACAACAAAATGTAATGTAAAATGAGATAGTATTTCACTTCTAATTTGAGTTTTGGATATTTTGTTTCTCTGAACTACCTAGACTGTATTTGTGTAAATAAAAACCAGCGAGGCAGCCATGTTACTTTGCTGTGCCTCTTAGCAAAAGCAAAAAAGGCACGAAATCACTTTATAAATACTCATATTTGAGTTAGAAATAGTCCATTAATAAAATAATGTTCACTGAACCTTATGCTTAAAGCGGGAGACTGGTAGTTGTAATACTCAACTGAAATTTTCTTCAATGGAACCATGTCACAGAACTCAAGCTACGTTTTTACAAAGAGAAAATATAGGCACGTTTCTCATCTCTGATGCATGTGTTTGTTCTTCTTAAAATCCACGCATGTGTTGTAAAACTCAGTGTAATTTTTGTGGTATGTCATTCTTACTCTATTTAGTAAACAGATGTGTGACTACATACATGCGTGCAGTGTGGCTTCTAATCCTTAGGACAGAAATAATAGTAGTAAAACTCTCCTTTTACAAAACGATCTGTATGTAGTTATGATGGGATGAGAACATAGCTTCAGGAAGACAGCAGGGGCTACATTTATTAAAATATATACTGAAATGTCAAAGATGTTTACTTTCAGCTTATTTCCAGATTGAACTTTTGATTGCATCATGTGTGCTCTTGGATTTGGTGCCTCTACATATCCTTAAAGGATGAACCAATGCTTTTCAGTTGTAATGATTACTGGCAAGATCCTAACCTGAGATACCTTCTGGCATTCATTGGTTTAAGGCAGTTATCCTGTGTATGTATTCCATATGAAGAGCCATGTATCCTCCATCTGGTTCATTAAATTTGATTTCTTTTAATGGTAGATGAAAAGCAACACAAAACAAAGCACTTAACTGTAAAAGTTTATGAGGCTAAAGTCATTGCAAAAATATTAAACTATCAAAAAATATGAATAGCAGAATAATCCAAGAAGAATTGTGCTGCTGTTGTTACATATGAAATTATTTTCCTCTCAGTAGCTCCATTGATTCCAACATTTATAAGTTTCTAAACATCTTAGTCTTGTTTCCTTCAGTGTAAGGCCATGGGTATGTTCAAGGCTCAGCTGAAGATGTGTCATGCTGGTTAAGCTCAGAGGGGCACATTTATTAGTTTGCTAGATAATACTGATGTACTGCACCTCTAAACACACATAATAAAGGCAGTAGTTGTAGGCTCATCAGAACAGATCCATCAGATTCTACAGCAGCAGCTAGTTGAACAGTGTTATCACTGAGGCTTTGTAAACAGTTTTTTAAAGTTAATAAGCATACACAAGCTGGACATTTTAGAAATGAAAATATCTCTGAATGTCTGTTTTTGTGTCACAGATTTCAAAGTCTGCTCTTTTTCTCTGCACAG
Seq C2 exon
TTTAGGTGTGGCTCTCTCTAGAGGACATGGAAAATATTTCTTCAGAGGGAATGTAACTGTGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005400:ENSGALT00000036263:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]