GgaINT0021402 @ galGal4
Intron Retention
Gene
ENSGALG00000006802 | LAMB2
Description
laminin subunit beta-2 precursor [Source:RefSeq peptide;Acc:NP_989497]
Coordinates
chr12:11553915-11554936:+
Coord C1 exon
chr12:11553915-11554251
Coord A exon
chr12:11554252-11554331
Coord C2 exon
chr12:11554332-11554936
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCCATCTTCCTCCCCGTAGCGC
3' ss Score
10.73
Exon sequences
Seq C1 exon
ATGCGGGCGCAGACGCTGGGTGCGGAGCAGCAGCTGGCTGCCGCCACGGAGCGGCTCGGTCTCCTGGAGGGACAGACGGACGCCCTGAAGGTGAAGCGTGCCAACAACAGCCTGGCGGCCACGCGTGCCCATGACGCGGCTGGCATCGCGCGGGACCGTGCCAGTGAAGCCAAGCAGGTGCTGGAGGGGCCGCTGAAGGACCGGTACCGGGCAGCCCAGGAGCTGGTGCAGCACCGGGCGCAGGGAGCGCAGCAGGCAGGCGGCCGGGCCCAGCAGCTGCGCGAGGAGGCCGCCGGGCTGCTGCAGGATGCCCAGGGCAAGCTGCAGAAGCTGCGAG
Seq A exon
GTGAGGCCAGGAAGGGTGCTGGGGTTGGGGGGATGTGGTGTGGGGCTGTCCTCACCCATCGCCCATCTTCCTCCCCGTAG
Seq C2 exon
CGCTGGAGGAGGCGTATGAGCGGAACGAGCGGGTGCTGGACGCCAAGGTGGCCCAGCTGGATGGGTTGGAGGCCAGGATGAGGGAGGTGCTGGCCACCATCAACCAGCAGGTCCAGATCTACAACACCTGCCAGTGATGGCCGCCCTGCTGCCCGCAGCCCCTCCTGCTCGCCTCGCCTCTGCCAGCCCTGGGGGTGGTGGGGGCTCAGAGAGCCCTTGCGATGGGCACCCCGCGTGTGAATAAAGCTACCCAGCAAGATTCTTGTCTCCGTATTATGGCTTCCATCCCCACCCTGCTGGTCTGGGGCTGCCTATAGGGCTGGGCAGCCGTGCCGGGCTGCCGTGGGTGCCATGGAGCGGAGAGGTGACGCTGGTGATGGGATTTGGCCGACGTGCAGCACATGCAGGGCCCGAGTGGGAGCACGGGTGGCAGTGCTGGGGGAGAGCTGGCACGGCGGAGGCCGCGGGCTGGCCGACTGGGGTTGGGACGGAGCACAGCTTGGGACGGTGCGGACACGCGGGAGGGCCGGGAACACGGCGGGACGCTGCAGGCCCGACGCGCGCAGCAGGCCCGGGCCGTTGCCACGGAGACGCCCCGCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006802:ENSGALT00000036239:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGGATGCCCAG
R:
CCATCACTGGCAGGTGTTGTA
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]