RnoINT0084129 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117280032-117280517:+
Coord C1 exon
chr8:117280032-117280191
Coord A exon
chr8:117280192-117280270
Coord C2 exon
chr8:117280271-117280517
Length
79 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTATTCCTTGACCTTTCTAGAAC
3' ss Score
7.87
Exon sequences
Seq C1 exon
CAGCTACGGGAACAAGTAGGTGACCAGTACCAAACTGTGAGGGCGTTGGCTGAACGGAAGGCTGAAGGTGTTCTGGCCGCACAAGCCAGAGCAGAACAACTGCGGGATGAGGCTCGGGGTCTGTTGCAGGCTGCTCAGGACAAGTTGCAGCGGCTACAGG
Seq A exon
GTGAGGACCATGGTGGGCAGTAGCTAGAAAGGGGTGGGCTTGTGTGAGAAAGACCTAAACTATTCCTTGACCTTTCTAG
Seq C2 exon
AACTGGAGGGCACATATGAAGAGAATGAACGCGAACTGGAGGTCAAAGCGGCTCAGCTGGATGGGCTGGAGGCCAGGATGCGCAGTGTGCTTCAGGCAATCAACCTGCAGGTCCAGATCTACAACACCTGCCAGTGACCACTCCCTAGGGTTTAGCCTTGTCTCCAAGCACAGTTCCACATGCGTTTGTCCGCACATTAAAGAGCTCTTGGCTAGCAAGTGCTTTCAATAAACCAGTGTGAACCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAAACTGTGAGGGCGTT
R:
ACCTCCAGTTCGCGTTCATTC
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]