MmuINT0089682 @ mm9
Intron Retention
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108392377-108392861:+
Coord C1 exon
chr9:108392377-108392536
Coord A exon
chr9:108392537-108392614
Coord C2 exon
chr9:108392615-108392861
Length
78 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTATTTCTTGACCCTTCTAGAGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
CAACTACGGGAACAAGTAGGTGACCAATACCAAACAGTGAGGGCGTTGGCAGAGCGGAAGGCTGAAGGTGTTCTGGCTGCACAAGCCAGGGCAGAACAACTGCGGGATGAGGCTCGGGACCTGTTGCAGGCCGCTCAGGATAAGCTGCAGCGGCTACAGG
Seq A exon
GTGAGGACCATGGTGGGCGGGAGCTAGAAAGGTGGGCTTGCGTGAGAAAAGACTTGAACTATTTCTTGACCCTTCTAG
Seq C2 exon
AGCTGGAGGGCACATATGAGGAGAACGAGCGTGCACTGGAGGGCAAAGCGGCCCAGCTGGATGGGCTGGAAGCCAGGATGCGCAGTGTGCTCCAGGCCATCAACTTGCAGGTCCAGATCTACAACACCTGCCAGTGACCACTCCCTAGGGCCTAGCCTTGTCGCCAAGCACTGTTCTGCACACGATCGTCCGCACATTAAAGAGCTCCTGGCTAGCAAGAGCTTTCAATAAACCTGTGTGAACCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-Lamb2:NM_008483:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.422
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGAACAAGTAGGTGACCA
R:
TCCTCATATGTGCCCTCCAGC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: