GgaINT0022763 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2653787-2654087:+
Coord C1 exon
chr12:2653787-2653947
Coord A exon
chr12:2653948-2654024
Coord C2 exon
chr12:2654025-2654087
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CCACGGTTGTGTGGTTGCAGATC
3' ss Score
7.45
Exon sequences
Seq C1 exon
AGCTGCTGAAGTCCAACAGCTCCCAGTGGCTGCTGGCCCCAGGGGATGTGCCGGGCTCCCAGGCGCTGCTGCTGGATGAGGACAGGGCCTGGCTGATGGTGGGATCCAAGAACCACATCATCCTGCTGCACCTGGAGCAGCCGGGCAGGGAGCCCGAGAAG
Seq A exon
GTCAGCATGGGGCAGTGGGTGTCCGCCGGGCATCCGGCACCGCATCCCCATCACAGCCCACGGTTGTGTGGTTGCAG
Seq C2 exon
ATCTCCTGGCCGGCACCCAGGGCGCAGGTGGAGCACTGCCGGCTGGCAGGCAAGGACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
NA
C2:
PF0140314=Sema=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGCCGGGCTCCCAG
R:
CACGTCCTTGCCTGCCAG
Band lengths:
177-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]