GgaINT0022770 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2655398-2655690:+
Coord C1 exon
chr12:2655398-2655467
Coord A exon
chr12:2655468-2655545
Coord C2 exon
chr12:2655546-2655690
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACTGACAGCCGCCCCGCAGCGC
3' ss Score
2.46
Exon sequences
Seq C1 exon
AGGACGTTTTCCTCCTCCACACACGAGACCCCCAGAACCCCCTCGTCTTCGGCCTCTTCACGGCATCCAG
Seq A exon
GTGAGCCCACCCCTGCGCACGGGGCATCCATGAGCCTCCCCCAGCCCTCACCCTGCTACACTGACAGCCGCCCCGCAG
Seq C2 exon
CGCTGTGTTCAGCGGCTCCGCCGTCTGCGTCTACTCCATGGCTGCAGTCAGAGCAGCCTTCAGCGGCCCCTTCGCGCACAAGGAGGGCTTCGACCACCGCTGGGTGCAGTACAAGGGCCGCGTCCCCTACCCCCGCCCTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.1=100)
A:
NA
C2:
PF0140314=Sema=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCCTCCACACACGAGA
R:
CCCTTGTACTGCACCCAGC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]