GgaINT0022770 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2485760-2486052:+
Coord C1 exon
chr12:2485760-2485829
Coord A exon
chr12:2485830-2485907
Coord C2 exon
chr12:2485908-2486052
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACTGACAGCCGCCCCGCAGCGC
3' ss Score
2.46
Exon sequences
Seq C1 exon
AGGACGTTTTCCTCCTCCACACACGAGACCCCCAGAACCCCCTCGTCTTCGGCCTCTTCACGGCATCCAG
Seq A exon
GTGAGCCCACCCCTGCGCACGGGGCATCCATGAGCCTCCCCCAGCCCTCACCCTGCTACACTGACAGCCGCCCCGCAG
Seq C2 exon
CGCTGTGTTCAGCGGCTCCGCCGTCTGCGTCTACTCCATGGCTGCAGTCAGAGCAGCCTTCAGCGGCCCCTTCGCGCACAAGGAGGGCTTCGACCACCGCTGGGTGCAGTACAAGGGCCGCGTCCCCTACCCCCGCCCTGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(5.3=100)
A:
NA
C2:
PF0140314=Sema=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCCTCCACACACGAGA
R:
CCCTTGTACTGCACCCAGC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]