GgaINT0023779 @ galGal3
Intron Retention
Gene
ENSGALG00000000817 | ZNF821
Description
NA
Coordinates
chr11:21709563-21710334:+
Coord C1 exon
chr11:21709563-21709688
Coord A exon
chr11:21709689-21710191
Coord C2 exon
chr11:21710192-21710334
Length
503 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
AACTGCTTTGTTTGTTCAAGGTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GGGAGCAAGTCTTTGCGGGGCTGGAGGAGCAAGCCCGCCAAGCCATGATGAAAAACAGCTTTCCTGGAGCTCTTGGGGACCAAAGGCCAGCTATTCATCCACTGCAAGACCGCGATTTCAGCAGCA
Seq A exon
GTGAGTTCTGCCCCTTCCAGTAATTGCAAGGTAGTGGACTGGAGAGACTGACAGGGTGAGGCTAGGTGCTACAGAGCAGGTAGGAATTCTCTGAGGACCATCTTACCCATCTTCTCCTTTGGGTTAGACCTTGATTCTTGTGCTGTCAGCTCTGTATCAGCCAACAGTAAGAGCAGAACTGCTCACTAAGGGAAGACAAGCCCAGAGCCAATGGCCCTACTGCAGTTTGAACAGTAACCTCACCACTAGAGTACAGTTCCACAGTACCAGAGCAGAATGGTGACAGCACCAGGCTCTGTTGACAGTCTAGTGATCATCAAGCAAGGCCAGGTAACAGGCCAGATCCAGGGATTTCACGTGGTTCTTTGGGGATTGAAGTACTCCCTGAGTTTAAATGGGGTCCCTGGTCTTCAGTGTGAGTGGAGACCCTAGGTGAGTCTAGTCAGGGCAATTAAGTTCTGTTAGGGTCCTGACATTTGGAGTAACTGCTTTGTTTGTTCAAG
Seq C2 exon
GTGGCAGTGATGATGAGGAAACCACCCACGATGAAGTTTCTTCCCATACTTCAGAGGAGGATGGCTCAATGCTAAAGGTGAAGAAAGAACTGGAGAATGCAGAACAACATGCAGCTGGAACCCCACTGATGAGAGAGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000817:ENSGALT00000001191:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTTTGCGGGGCTGG
R:
TCATTCTCTCTCATCAGTGGGGT
Band lengths:
263-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]