GgaINT0024805 @ galGal3
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1325305-1325512:+
Coord C1 exon
chr11:1325305-1325369
Coord A exon
chr11:1325370-1325447
Coord C2 exon
chr11:1325448-1325512
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACGTCCCTTTGCCCTAGGAA
3' ss Score
10.79
Exon sequences
Seq C1 exon
CTGGACCTGGAGCTGTCCCTGCTGGAGCAGAAGGATGACCTGGAGGCTTTCTACGAGGAGGTCAG
Seq A exon
GTGAGACACGCGGGGGGCACTGGGCGCACGGGGACGGTGCCCCTATGCCAGTGCTCAGCCCACGTCCCTTTGCCCTAG
Seq C2 exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCTGGAGCTGTCCC
R:
TGGACACGGACGGAGAGC
Band lengths:
119-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]