GgaINT0024805 @ galGal4
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1342098-1342347:+
Coord C1 exon
chr11:1342098-1342204
Coord A exon
chr11:1342205-1342282
Coord C2 exon
chr11:1342283-1342347
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCACGTCCCTTTGCCCTAGGAA
3' ss Score
10.79
Exon sequences
Seq C1 exon
CTGGAGGACTGCACGCTGCAGGTGTCCCCATCCGGCCACTACCTGGACCTGGAGCTGTCCCTGCTGGAGCAGAAGGATGACCTGGAGGCTTTCTACGAGGAGGTCAG
Seq A exon
GTGAGACACGCGGGGGGCACTGGGCGCACGGGGACGGTGCCCCTATGCCAGTGCTCAGCCCACGTCCCTTTGCCCTAG
Seq C2 exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACTGCACGCTG
R:
GGACACGGACGGAGAGCT
Band lengths:
160-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]