GgaINT0024806 @ galGal3
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1325448-1326282:+
Coord C1 exon
chr11:1325448-1325512
Coord A exon
chr11:1325513-1326214
Coord C2 exon
chr11:1326215-1326282
Length
702 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TCCCATGCCTTTGCTTGCAGAGA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
Seq A exon
GTGAGCTGGGGGGGGTCTCCTCACCCCTGGGGCCGGAAGTCCATCGCACGCTGCGGGGATTTGGGGTCATCCAAGCGAGCTCTAAATATAGCCCCGGCAAATGCAAACAAATGGCTTACTTGGGGACAAGCGCTCGGACGCACTGATGCTTTCCATCCGGAGCGGGGGGAAAAGCCAGCGGTGCTGGGAAGGAAAGGACCGGCAATGGGGTCAGGGTCGCGCTCCCCACGCGCGGTTCCCAGGCTCTGGAATGCTCCGTCCCGGAGGCTCCGGGAAGGTTTGGCAGAGCGCTGGTTGGCCTGGCCGAAATACATAGGAAAACAGTAAAAAATAGACAGATGGGTTTGGCGAGCTGCGTGCCTCCTTTGAAGGCTGCCAGCCGTGGGATGGGGACGAAGGGGGTGGCGGAGCGATGCCCGCAGGGTTGTGCAGATGGGGTTCCTGTGGGTAACTCAGCCCCGGGGCTGTGCCTCCTGCCCGGGTTCCTGTTTCGGTTCAGCGCAGGAAACCAGAGGGGATATTTGTGTCATCACTGGGCAGAAAAAACAGAAAGAAAAGAAAATAGGAAAGTGGCAGCGCTGAAAGCAGTGGCGGTGGTGGAGCTGCTGCTGCTCCCATCCCATGTGTCCCACATCCCGTCGCTGTGCCACGTCCCTCTGTGCCGCTCTGCCCAGCAGCCCATTCCCATGCCTTTGCTTGCAG
Seq C2 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]