RnoINT0061047 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37293619-37294069:-
Coord C1 exon
chr19:37294005-37294069
Coord A exon
chr19:37293687-37294004
Coord C2 exon
chr19:37293619-37293686
Length
318 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGACCACTTACCCCTTACAGAAA
3' ss Score
8.35
Exon sequences
Seq C1 exon
CAAAGGGCGGAAGCCCACATTGATCCTGCGGACCCAGCTCTCTGTGAGGGTCAATGCTATCTTGG
Seq A exon
GTAAGTGTGTGGTATCTCCTGCCATCTTGTTCCCTTCTTTTCTTACGTAGGCCAGTTGGTGTAGCTTCTTCCCGGCCTGTGCTGGGCTATGGATTGGGTGGATTAGAGATCTGGTGTGTCTTCCTCTCTCCCTTTCCCGTCCTTTTCTTCTGGGTCAAGATTGATGCCACAGCTGGACTGCAGTCATGGTGACAGAGGATTGTGTCCAGAGTCAGAATAGAGAGCAGGCTTGACACTGCTAGAGGCTTTGGTTATGCTAGTGGAAGAAGACACCGTCTGTGCTCCCTTGAATTGTTTATGACCACTTACCCCTTACAG
Seq C2 exon
AAAAGCTGTATGGCTCCAGTGGCCCCGAGCTCCGCCGATCCCTCTTTTCATTAAAGCAGATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]