GgaINT0024806 @ galGal4
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1342283-1343117:+
Coord C1 exon
chr11:1342283-1342347
Coord A exon
chr11:1342348-1343049
Coord C2 exon
chr11:1343050-1343117
Length
702 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TCCCATGCCTTTGCTTGCAGAGA
3' ss Score
8.66
Exon sequences
Seq C1 exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
Seq A exon
GTGAGCTGGGGGGGGTCTCCTCACCCCTGGGGCCGGAAGTCCATCGCACGCTGCGGGGATTTGGGGTCATCCAAGCGAGCTCTAAATATAGCCCCGGCAAATGCAAACAAATGGCTTACTTGGGGACAAGCGCTCGGACGCACTGATGCTTTCCATCCGGAGCGGGGGGAAAAGCCAGCGGTGCTGGGAAGGAAAGGACCGGCAATGGGGTCAGGGTCGCGCTCCCCACGCGCGGTTCCCAGGCTCTGGAATGCTCCGTCCCGGAGGCTCCGGGAAGGTTTGGCAGAGCGCTGGTTGGCCTGGCCGAAATACATAGGAAAACAGTAAAAAATAGACAGATGGGTTTGGCGAGCTGCGTGCCTCCTTTGAAGGCTGCCAGCCGTGGGATGGGGACGAAGGGGGTGGCGGAGCGATGCCCGCAGGGTTGTGCAGATGGGGTTCCTGTGGGTAACTCAGCCCCGGGGCTGTGCCTCCTGCCCGGGTTCCTGTTTCGGTTCAGCGCAGGAAACCAGAGGGGATATTTGTGTCATCACTGGGCAGAAAAAACAGAAAGAAAAGAAAATAGGAAAGTGGCAGCGCTGAAAGCAGTGGCGGTGGTGGAGCTGCTGCTGCTCCCATCCCATGTGTCCCACATCCCGTCGCTGTGCCACGTCCCTCTGTGCCGCTCTGCCCAGCAGCCCATTCCCATGCCTTTGCTTGCAG
Seq C2 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]