GgaEX0002701 @ galGal4
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1342098-1343117:+
Coord C1 exon
chr11:1342098-1342204
Coord A exon
chr11:1342283-1342347
Coord C2 exon
chr11:1343050-1343117
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCACGTCCCTTTGCCCTAGGAA
3' ss Score
10.79
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTGGAGGACTGCACGCTGCAGGTGTCCCCATCCGGCCACTACCTGGACCTGGAGCTGTCCCTGCTGGAGCAGAAGGATGACCTGGAGGCTTTCTACGAGGAGGTCAG
Seq A exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
Seq C2 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198_MULTIEX1-2/18=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACTGCACGCTG
R:
AGAGCTGCTTGAGGGAGAAGA
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]