GgaEX1025091 @ galGal4
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1336785-1350244:+
Coord C1 exon
chr11:1336785-1337084
Coord A exon
chr11:1344593-1344813
Coord C2 exon
chr11:1350088-1350244
Length
221 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCCATCCCACTGCAGAGC
3' ss Score
8.41
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CCCGCTTACACCCGCGGAGGGCGCCCGAGCGCGGGGCGGTGCCGGCTCAGAGCCGGGGCGGTGCCGGGGGCTGTCCCGATGCCACCCCCGGAGCTCCGGGCGCGGTGCGGCGGCGGTGGCGGTGCCGCCATGGCGGAGGCTGCGGTCCCGTGCCGGGTGCAGTACCTGGAAGACTCCGATCCCTTCGGCTGCGGCAGTTTCCCGGAGCCCCGACGGGCGCCTGTTTACGCCGTGGAGGAAGCGTTGGCCCTGGGAGCGCAGCTGCCCGCGGTGCACCGGCTGCTGGGAGCGCCGCTGCCG
Seq A exon
AGCGCACTGCGGCTGGAGGATGGCGTGGAGGAGCCGCCGGCAGGCGGGCGCAAGGAGCGCAGGAAGACAGACGAGGGGCGGCGTGGGTGGAGAGCACAGGGGAGCTGTGCTGAGCCCGACCCTCTGCAGAGCCCAGGGAGCCCCGCATCCCCAAATGAGACCCCCAGCACCCCGAAGGAGCCGCCTATTGAGGACAGCCCTGAGCTGAGCATCCCAGTGGA
Seq C2 exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198_MULTIEX1-9/18=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.919 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCGATGCCACCCC
R:
CCACCTCTGCCTGCTCCT
Band lengths:
315-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]