GgaALTD1009864-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1345255-1346415:+
Coord C1 exon
chr11:1345255-1345278
Coord A exon
chr11:1345279-1345665
Coord C2 exon
chr11:1346252-1346415
Length
387 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
CACCTGTCCCTGTCTCGCAGAGC
3' ss Score
10.43
Exon sequences
Seq C1 exon
GCTGCACCAACCTGCTGCTGTCTG
Seq A exon
GTAAGTGCCCGTGCTCTGCGTGACACCTGCTTGCTGTACCCAGCCCTTCATCTCCTCTGCTTGCACCCTCTCTGGGTGGCCAGGACCCCCATACCACAACTGTCCCACTTGGGGTGACAGCACCCTCCAACCCCTTATGGGGCTCCCATGCCCTCTCCAGCCTGCAGCATCCTGGTGGCAGGTCGGGTGGTACTGGTGACAAGGACAGTGCTCCCAGCGTCACCAACACCATGCAAGAGCAGTTCTTGCTGGGGAGCCCTATGCCGTGCCATGGGGCTGGGGGTGGGGGCAAGAGATCTCCATTAGCAGGGGCTAACCCCTGTTTTCCCTCAGGCGGGAGGATGCCCCCTCCTTGCATGGGGACAAACCTATTCTGAAGAGGTTTGA
Seq C2 exon
AGCTCGCTTCTTGGAGAACCTGGCTGCTGCCCAGAAGGAGAAGATGTCTGCCATGGCAAAGGGACGGATCGACATCCTCAGCGATGTTGCACCACTGGAGCATCCCGTCACTTGGGATGGGGACGGCAGTAACCCTGATGCTGGCACAGAACCACCCCGCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-15-17,16-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.893
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACCTGCTGCTGTCTG
R:
CATGCGGGGTGGTTCTGTG
Band lengths:
183-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]