GgaEX1025089 @ galGal4
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
FH1/FH2 domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012792]
Coordinates
chr11:1336785-1350244:+
Coord C1 exon
chr11:1336785-1337084
Coord A exon
chr11:1344199-1344293
Coord C2 exon
chr11:1350088-1350244
Length
95 bp
Sequences
Splice sites
3' ss Seq
ACCTGCGTTGCTTGTCCCAGGTG
3' ss Score
8.88
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCCGCTTACACCCGCGGAGGGCGCCCGAGCGCGGGGCGGTGCCGGCTCAGAGCCGGGGCGGTGCCGGGGGCTGTCCCGATGCCACCCCCGGAGCTCCGGGCGCGGTGCGGCGGCGGTGGCGGTGCCGCCATGGCGGAGGCTGCGGTCCCGTGCCGGGTGCAGTACCTGGAAGACTCCGATCCCTTCGGCTGCGGCAGTTTCCCGGAGCCCCGACGGGCGCCTGTTTACGCCGTGGAGGAAGCGTTGGCCCTGGGAGCGCAGCTGCCCGCGGTGCACCGGCTGCTGGGAGCGCCGCTGCCG
Seq A exon
GTGCATGCCCATGGTCCAACCTGATGGCCATCCTTGAGCAGCGCAATGGGGCTGACACGGAGCTGCTGGTGTTCGCCATGACGTTGATCAACAAG
Seq C2 exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198_MULTIEX1-7/18=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.000 C2=0.962
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACCTGGAAGACTCCGA
R:
CCTCGGTGATGCCAGAGAACT
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]