MmuEX6037917 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107860787-107861329:-
Coord C1 exon
chr8:107861218-107861329
Coord A exon
chr8:107861023-107861117
Coord C2 exon
chr8:107860787-107860930
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTTTCTGTGCGGCAGGTA
3' ss Score
9.72
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCCCGCTTGGTGGTAAAGACAGCCCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCCGAGAACAACGCGCCGCTGTTCATCCAGGCAGTCAACGCAGTAGCCAGTGCCACCG
Seq A exon
GTACTCTTCCCTGGGCCAACTTGGTGTCCATCCTGGAGGAGAAGAATGGAGCTGATGCAGAGTTGTTGGTGTACACTGTCACTCTCATTAACAAG
Seq C2 exon
ACGCTGGCGGCACTCCCAGACCAGGACTCCTTCTATGATGTGACAGATGCTCTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAACGTTTCTTGGGCACCGCTGGCACTGATGTTGACCTGCGAACCCAGCTAACGCTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PU(7.5=21.1)
A:
PF0636711=Drf_FH3=FE(29.0=100)
C2:
PF0636711=Drf_FH3=FE(43.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCATCCAGGCAGTCAA
R:
GGTTCGCAGGTCAACATCAGT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: