GgaEX6020761 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85606510-85618305:+
Coord C1 exon
chr2:85606510-85606621
Coord A exon
chr2:85613254-85613348
Coord C2 exon
chr2:85618162-85618305
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTTTACATGTAGGAG
3' ss Score
8.89
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TTCCGCCTTGTGGTAAAGACAGCACTGAAGCTGCTGCTTGTATTTGTGGAGTACACTGAATCCAATGCACCACTTTTAATCCAAGCAGTATCTACAGTTGATGAAAAGAGAG
Seq A exon
GAGCCAAGCCTTGGTCCAACATCATGGAGATCCTGGAGGAGAAAGATGGGGTTGATACTGAACTACTGGTTTATGCCATGACTTTGGTTAACAAG
Seq C2 exon
ACGCTGTCGGGGTTGCCAGATCAAGACTCTTTCTACGATGTGGTGGACTGTCTCGAAGAGCTGGGCATTGAAGCTATTTCACAGAGACACTTGAACAAGAAAGGAACAGACTTGGACTTAGTTGAACAATTTAACATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'7-14,'7-13,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGTGGTAAAGACAGCA
R:
TCTTCGAGACAGTCCACCACA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]