HsaEX6038708 @ hg19
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34174750-34192058:+
Coord C1 exon
chr18:34174750-34174861
Coord A exon
chr18:34182637-34182731
Coord C2 exon
chr18:34191915-34192058
Length
95 bp
Sequences
Splice sites
3' ss Seq
GATTTTTGCTTTACTCATAGGGG
3' ss Score
6.52
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACAGCCCTGAAGCTGCTGCTCGTCTTTGTAGAGTACTCGGAGTCCAACGCACCTCTCCTAATTCAGGCTGTCACTGCTGTTGACACGAAAAGAG
Seq A exon
GGGTCAAACCTTGGTCAAATATCATGGAAATCCTGGAGGAAAAAGATGGAGTTGATACGGAGCTACTGGTTTATGCAATGACTTTGGTGAACAAG
Seq C2 exon
ACGTTATCAGGACTACCAGACCAAGACACCTTCTACGACGTCGTGGACTGCCTGGAGGAGCTGGGCATTGCTGCTGTGTCCCAGAGGCACTTGAACAAGAAAGGGACTGACCTGGACTTAGTGGAGCAACTCAACATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.006
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(11.6=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTCGTCTTTGTAGA
R:
GTTCAAGTGCCTCTGGGACAC
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)