GgaEX6020761 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83345381-83357177:+
Coord C1 exon
chr2:83345381-83345492
Coord A exon
chr2:83352126-83352220
Coord C2 exon
chr2:83357034-83357177
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGTTTTACATGTAGGAG
3' ss Score
8.89
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
TTCCGCCTTGTGGTAAAGACAGCACTGAAGCTGCTGCTTGTATTTGTGGAGTACACTGAATCCAATGCACCACTTTTAATCCAAGCAGTATCTACAGTTGATGAAAAGAGAG
Seq A exon
GAGCCAAGCCTTGGTCCAACATCATGGAGATCCTGGAGGAGAAAGATGGGGTTGATACTGAACTACTGGTTTATGCCATGACTTTGGTTAACAAG
Seq C2 exon
ACGCTGTCGGGGTTGCCAGATCAAGACTCTTTCTACGATGTGGTGGACTGTCTCGAAGAGCTGGGCATTGAAGCTATTTCACAGAGACACTTGAACAAGAAAGGAACAGACTTGGACTTAGTTGAACAATTTAACATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'12-27,'12-26,14-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.9=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000037064fB2386
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTGTGGTAAAGACAGCA
R:
TCTTCGAGACAGTCCACCACA
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]