RnoEX0036026 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17175978-17254858:+
Coord C1 exon
chr18:17175978-17176089
Coord A exon
chr18:17182718-17182812
Coord C2 exon
chr18:17254724-17254858
Length
95 bp
Sequences
Splice sites
3' ss Seq
GATCTTTGCTTTATTTGTAGGTG
3' ss Score
8.66
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACGGCCCTGAAGCTTCTGCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCGCTTCTCATTCAGGCTGTTTCTGCTGTTGACACCAAAAGAG
Seq A exon
GTGTCAAACCCTGGTCCAACATCATGGAAATCTTGGAGGAAAAAGATGGAGTTGACACAGAACTCTTGGTTTATGCAATGACTCTAGTAAACAAG
Seq C2 exon
GTCATCGCCAAGTGGCCTTCTCACATCCTCCTTTAGACAGCACCAAGAGTCACTGGCAGCGGAGAGAGAGCGGAGGCGGCAAGAGAGAGAAGAAAGACTGCAGAGGATAGAACGGGAAGAAAGGAACAAATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX1-4/10=2-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.7=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000041961fB5560
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTGCTGGTCTTTGTGGA
R:
TTCTTCTCTCTCTTGCCGCCT
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]