MmuEX6000633 @ mm10
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:24985214-24994559:+
Coord C1 exon
chr18:24985214-24985325
Coord A exon
chr18:24989973-24990067
Coord C2 exon
chr18:24994416-24994559
Length
95 bp
Sequences
Splice sites
3' ss Seq
GGTCTTTGCTTTACTTGTAGGTG
3' ss Score
7.98
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTCCGCCTGGTAGTGAAGACAGCCCTGAAGCTTCTTCTGGTCTTTGTGGAGTATTCTGAGTCCAATGCACCACTTCTCATTCAGGCCGTTTCTGCTGTCGACACCAAAAGAG
Seq A exon
GTGTCAAACCCTGGTCCAACATCATGGAAATCTTGGAGGAAAAAGATGGAGTTGACACAGAGCTATTGGTTTATGCAATGACTCTAGTGAACAAG
Seq C2 exon
ACACTGGCAGGACTGCCAGATCAAGACACCTTCTATGACGTAGTAGACTGCCTGGAAGAGCTGGGCATCGCCGCTGTGTCCCAAAGGCACTTGAACAAGAAAGGGACAGACCTGGACTTGCTGGAGCAGTTTAATATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'11-15,'11-13,14-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCCTGGTAGTGAAGACA
R:
CCAGCTCTTCCAGGCAGTCTA
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types