BtaEX0014634 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20826417-20843247:-
Coord C1 exon
chr24:20843136-20843247
Coord A exon
chr24:20833949-20834043
Coord C2 exon
chr24:20826417-20826560
Length
95 bp
Sequences
Splice sites
3' ss Seq
GATTTTTGCCTTATTCATAGGAG
3' ss Score
6.01
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACAGCCCTGAAGCTGCTGCTGGTCTTTGTGGAATACTCGGAGTCCAATGCACCTCTCCTGATTCAGGCCATCTCTGCCGTGGACACAAAAAGGG
Seq A exon
GAGTCACACCCTGGTCAAATATCATGGAAATCCTGGAGGAAAAGGATGGGGTCGACACGGAACTGCTGGTTTACGCGATGACTTTAGTGAACAAG
Seq C2 exon
ACCTTGTCCGGTTTGCCAGACCAAGACACCTTCTACGACGTGGTGGACTGCCTGGAGGAGCTGGGCATTGCAGCCGTGTCCCAGAGGCACCTGACCAAGAAAGGGGCTGACCTGGACTTAGTGGAGCAGTTGAACATCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581-'15-15,'15-14,16-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(12.6=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCGGAGTCCAATGCACCT
R:
GTCAGCCCCTTTCTTGGTCAG
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development