DreEX6071298 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:739762-741007:+
Coord C1 exon
chr19:739762-739873
Coord A exon
chr19:740090-740184
Coord C2 exon
chr19:740864-741007
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTGTACAGGCT
3' ss Score
8.38
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TTTCGTCTGGTGGTGAAGACGTCTCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCAGAGTCCAATGCTGCACTGCTCATCCAGGCCATAGACACTGTGGACAACAAGAGAG
Seq A exon
GCTGTAAGTCATGGTCAAACGCTATGGAGATTTTAGCAGAGAAAGACGGTGTGGACACAGAGCTGCTGGTGTATGTGATGACCCTCATCAATAAG
Seq C2 exon
ACGTTGGCGGCTCTGCCTGATCAGGACTCGTTTTATGATATGGTGGATGTTCTTGAGGAGCAGGGCATGGAGAGCGTTTCTCAGCGGTATCTGGGCCGCAAGGGCACCGATCTGGACCTGCTGGAGCAGCTCAACATATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(12.3=39.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGTGTTTGTGGAGTA
R:
GCCCAGATACCGCTGAGAAAC
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]