DreEX6006124 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34312085-34313335:+
Coord C1 exon
chr7:34312085-34312196
Coord A exon
chr7:34313012-34313106
Coord C2 exon
chr7:34313192-34313335
Length
95 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTGTCTCTTTCAGGTG
3' ss Score
13.46
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
TCTCGGCTGGTTGTGAAGACTGCTCTGAAGCTGCTGATAGTGTTTGTTGAATACACCGAGTCCAATAGTCCACTGCTTATTCAGGCCGTCAACATTGTGGATGGAAAGAGAG
Seq A exon
GTGTGAAGCCTTGGACGATCCTTATAGACATTCTGTCTGCAAAGAATGGATCAGACACAGAGCTGCTCATCTACACCATGACCCTCATTAACAAG
Seq C2 exon
ACTCTGGCAGCACTTCCTGATCAGGACTCATTTTATGATGTGACAGACTGTTTGGAGCAGCTAGAAATGGAAAGCATCATCCAGAAACACATGACTAGCAGCGGCACTGAGGGTGACCTTAAACAGCAGTTCACTATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGCTGGTTGTGAAGACTG
R:
GCTGCTCCAAACAGTCTGTCA
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]