BtaEX0014621 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34983260-34983802:-
Coord C1 exon
chr18:34983691-34983802
Coord A exon
chr18:34983513-34983607
Coord C2 exon
chr18:34983260-34983403
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTTTCTGGGTGGCAGGTG
3' ss Score
8.28
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
TCCCGCTTGGTGGTGAAGACAGCCCTGAAACTGCTACTGGTGTTCGTGGAATACTCTGAGAGCAACGCACCGCTGTTCATCCGTGCAGTCAACTCTGTGGCCAGCACCACGG
Seq A exon
GTGCTCCTCCGTGGGCCAATTTGGTGTCCATCCTGGAGGAGAAGAACGGCACTGACCCCGAGCTGCTGGTGTACACTGTAACCCTCATCAACAAG
Seq C2 exon
ACTCTGGCAGCCCTCCCGGACCAGGACTCCTTCTACGACGTGACGGATGCACTGGAGCAGCAGGGCATGGAAGCACTGGTCCAGCACCACTTGGGCAAGGCGGGCACTGACGTCGACCTGCGAGCCCAACTTGTACTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427-'8-14,'8-13,9-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGTGCAGTCAACTCTGTG
R:
GAGTACAAGTTGGGCTCGCAG
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development