MmuEX6037917 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105336887-105337429:-
Coord C1 exon
chr8:105337318-105337429
Coord A exon
chr8:105337123-105337217
Coord C2 exon
chr8:105336887-105337030
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTTTCTGTGCGGCAGGTA
3' ss Score
9.72
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCCCGCTTGGTGGTAAAGACAGCCCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCCGAGAACAACGCGCCGCTGTTCATCCAGGCAGTCAACGCAGTAGCCAGTGCCACCG
Seq A exon
GTACTCTTCCCTGGGCCAACTTGGTGTCCATCCTGGAGGAGAAGAATGGAGCTGATGCAGAGTTGTTGGTGTACACTGTCACTCTCATTAACAAG
Seq C2 exon
ACGCTGGCGGCACTCCCAGACCAGGACTCCTTCTATGATGTGACAGATGCTCTGGAGCAGCAGGGCATGGAAGCGCTGGTCCAACGTTTCTTGGGCACCGCTGGCACTGATGTTGACCTGCGAACCCAGCTAACGCTCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCATCCAGGCAGTCAA
R:
GGTTCGCAGGTCAACATCAGT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types