GgaEX0002701 @ galGal3
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1325305-1326282:+
Coord C1 exon
chr11:1325305-1325369
Coord A exon
chr11:1325448-1325512
Coord C2 exon
chr11:1326215-1326282
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCCACGTCCCTTTGCCCTAGGAA
3' ss Score
10.79
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTGGACCTGGAGCTGTCCCTGCTGGAGCAGAAGGATGACCTGGAGGCTTTCTACGAGGAGGTCAG
Seq A exon
GAAGGGCCGGCGGCCAACGCTGATCCTGCGCACGCAGCTCTCCGTCCGTGTCCACGCCATCATTG
Seq C2 exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCTGGAGCTGTCCC
R:
AGAGCTGCTTGAGGGAGAAGA
Band lengths:
128-193
Functional annotations
There are 0 annotated functions for this event