GgaEX0027165 @ galGal3
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1318025-1333190:+
Coord C1 exon
chr11:1318025-1319451
Coord A exon
chr11:1326215-1326282
Coord C2 exon
chr11:1333034-1333190
Length
68 bp
Sequences
Splice sites
3' ss Seq
TCCCATGCCTTTGCTTGCAGAGA
3' ss Score
8.66
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCTCTGTCCCCCTGCAGTCCCCCCCCGAGGGACCATCCCTGCACACCCCATGCATGCGGGGCACCCAGAGCATCCCTGTGCACCTGGAGCCCCTCGGTGCCCTCGGATCATCCCTACGCCCTCTCACCCCCCGCAGCCCACCCAGCACGCCATCCCCTCCCCCCTCCCCCCTTTACCCTTTGAAGCCGCCCGAGCAAAGCCCCGCTTACACCCGCGGAGGGCGCCCGAGCGCGGGGCGGTGCCGGCTCAGAGCCGGGGCGGTGCCGGGGGCTGTCCCGATGCCACCCCCGGAGCTCCGGGCGCGGTGCGGCGGCGGTGGCGGTGCCGCCATGGCGGAGGCTGCGGTCCCGTGCCGGGTGCAGTACCTGGAAGACTCCGATCCCTTCGGCTGCGGCAGTTTCCCGGAGCCCCGACGGGCGCCTGTTTACGCCGTGGAGGAAGCGTTGGCCCTGGGAGCGCAGCTGCCCGCGGTGCACCGGCTGCTGGGAGCGCCGCTGCCG
Seq A exon
AGAAGCTGTACAACTCGCAGGGCCCGGAGCTGCGGCGCTCCCTCTTCTCCCTCAAGCAGCTCTTCCAG
Seq C2 exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198_MULTIEX1-1/12=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACCTGGAAGACTCCGA
R:
CCTCGGTGATGCCAGAGAACT
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event