DreEX6006126 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34288174-34309987:+
Coord C1 exon
chr7:34288174-34288238
Coord A exon
chr7:34309131-34309198
Coord C2 exon
chr7:34309882-34309987
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCTGTCTTATAGAAA
3' ss Score
10.62
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAAGGAAAAAAGCCCATCTTGATTCTCCGTACGCAGCTTTCAGTGCGAGTTCATTCTATTCTAG
Seq A exon
AAAAATTGTACAACTCTCATGGTCCTGAGCTTCGACGATCCTTGTTTTCTTTAAAGCAGCTCTTCCAG
Seq C2 exon
GATGATAAGGACTTGGTTCCAGAATTTGTGATCTCCGAGGGTCTGACTTGTTTTATTAAAGTGGGTGCTGAAGCAGATCATAACTACCAAAACTACATTCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCATCTTGATTCTCCGT
R:
TGTAGTTTTGGTAGTTATGATCTGCT
Band lengths:
152-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]