MmuEX0019228 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105337852-105338466:-
Coord C1 exon
chr8:105338402-105338466
Coord A exon
chr8:105338030-105338092
Coord C2 exon
chr8:105337852-105337957
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACTTATCCCTTGTAGAAAAGCTG
3' ss Score
-3.24
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAAAGGGCGGAAGCCCACGTTAATCCTGCGGACCCAGCTCTCCGTGAGGGTCAATGCTATCTTGG
Seq A exon
CTGTATGGCTCCAGTGGCCCCGAGCTCCGCCGATCTCTCTTCTCATTAAAGCAGATATTCCAG
Seq C2 exon
GAAGACAAGGACCTGGTGCCCGAATTCGTGCACTCGGAGGGTCTGAGTTGCCTGATCCGCGTGGGTGCTGCTGCAGACCACAACTACCAGAGCTACATCCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'8-7,'8-6,9-7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCCCACGTTAATCCTG
R:
GGTAGTTGTGGTCTGCAGCAG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types