MmuEX0019228 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107861752-107862366:-
Coord C1 exon
chr8:107862302-107862366
Coord A exon
chr8:107861930-107861997
Coord C2 exon
chr8:107861752-107861857
Length
68 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTTATCCCTTGTAGAAA
3' ss Score
8.89
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAAAGGGCGGAAGCCCACGTTAATCCTGCGGACCCAGCTCTCCGTGAGGGTCAATGCTATCTTGG
Seq A exon
AAAAGCTGTATGGCTCCAGTGGCCCCGAGCTCCGCCGATCTCTCTTCTCATTAAAGCAGATATTCCAG
Seq C2 exon
GAAGACAAGGACCTGGTGCCCGAATTCGTGCACTCGGAGGGTCTGAGTTGCCTGATCCGCGTGGGTGCTGCTGCAGACCACAACTACCAGAGCTACATCCTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCCCACGTTAATCCTG
R:
CTCGAAGGATGTAGCTCTGGT
Band lengths:
164-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: