GgaEX0027169 @ galGal3
Exon Skipping
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1318025-1333190:+
Coord C1 exon
chr11:1318025-1319451
Coord A exon
chr11:1329745-1330613
Coord C2 exon
chr11:1333034-1333190
Length
869 bp
Sequences
Splice sites
3' ss Seq
TGGGCTCTATCTCTCCGCAGGGT
3' ss Score
11.56
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
CCTCTGTCCCCCTGCAGTCCCCCCCCGAGGGACCATCCCTGCACACCCCATGCATGCGGGGCACCCAGAGCATCCCTGTGCACCTGGAGCCCCTCGGTGCCCTCGGATCATCCCTACGCCCTCTCACCCCCCGCAGCCCACCCAGCACGCCATCCCCTCCCCCCTCCCCCCTTTACCCTTTGAAGCCGCCCGAGCAAAGCCCCGCTTACACCCGCGGAGGGCGCCCGAGCGCGGGGCGGTGCCGGCTCAGAGCCGGGGCGGTGCCGGGGGCTGTCCCGATGCCACCCCCGGAGCTCCGGGCGCGGTGCGGCGGCGGTGGCGGTGCCGCCATGGCGGAGGCTGCGGTCCCGTGCCGGGTGCAGTACCTGGAAGACTCCGATCCCTTCGGCTGCGGCAGTTTCCCGGAGCCCCGACGGGCGCCTGTTTACGCCGTGGAGGAAGCGTTGGCCCTGGGAGCGCAGCTGCCCGCGGTGCACCGGCTGCTGGGAGCGCCGCTGCCG
Seq A exon
GGTCCCACGCAGGCCGGCAGGACGTCTTTGACTCCTGTAGCACCATATCTGATACCAAGTTCATGCTGGACATGCTCTATGCCAAGGGCTCCTCGGAGCCAGGGAGGCAGAAGGTCTTCCCCGAGGAGCCATCATTGTCCCCGCACCACGGAGAGGTGGAGACGGACGCAGGGTCCAGCTGTGCCGAGGGACCTGGTGGTCAGGAACAAGAGAGTGCCCGGCCCCACGGCAGGGCTCCAGACGGGCTGGTGGCTAGTGCCCACGCCAAGCTGGCACGTGCTGCATCCAGCATCGATGCTGAGAGCCACACGCAGAAGCTGGAGAACACCGTCATGATGCCTGTCAAGAACGACGTGGAGTTGTCGTGGGAGCGCCTGGAGGCTGGCCCCGTGCAACTGAAAATCAAGGACCTGGACTTCACTGACCTGGGGGAGGAAGAGGACTTGGACGTCTTGGACTCGGGACCTATTGCCAATGGCTCCTTCCTTCCTGGCAGCATCGAGGCAGCGAGTGCGGGAGTTCTCATGGCTCCCCCTCCACTTCCTATGGTTCCCGGTTGCCCACCACCTCCACCTCCTCCCCCAGTGGTCCCTGGTTGCCCACCACCTCCACCTCCACCACCTATGGTCCCTGGCTGCCCGCCTCCCCCAGGGTTCTCAGGCCCCTCCGCCATGGATGGCCCTTCCCAAGCCAAGAAGAAGAGGACAGTGAAGCTCTTCTGGAAGGAGCTGAAGCAGCTGGATGGCACTGTGGGGTCAGGCAGGTTTGGGCAGGCGACACTGTGGGCATCCCTGCAAAACGTTGAGGTCAACACTGCCAAACTGGAGCATCTCTTTGAGTCCCGTGCAAAAGAGATGCCAGCTTCCAAG
Seq C2 exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198_MULTIEX1-6/12=C1-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.648 C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.3=51.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTTACCCTTTGAAGCCG
R:
CGGTGATGCCAGAGAACTTCT
Band lengths:
358-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]