DreEX0032771 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34329956-34333891:+
Coord C1 exon
chr7:34329956-34330048
Coord A exon
chr7:34331622-34332562
Coord C2 exon
chr7:34333736-34333891
Length
941 bp
Sequences
Splice sites
3' ss Seq
TTATATTGTGATTCCTCTAGAGG
3' ss Score
6.85
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
Exon sequences
Seq C1 exon
AATCTATTAGTGGTCAGGAGTCTCAAGGGGAGAACGTGAGCAGGCACACCCTGGAGCAGCCAGAGGACACGACGACAGCCCACAATGAAGCAG
Seq A exon
AGGGTGGTTTACAACGTCAGGGCAGCACAGCGGAGCAACACAGCACCCTCTCTGATGACCAGAGGTTCGTGATGGACATGCTCTACTCCAAAAGCAACACCAGTTCCGGAGCTCTAGAAAGTCCCAGTCTGGAAAGTGCACTTGAGGGCCATGGGATCAGAAGCATGGCGGTTCGGCTCTCCAGACTGCAGTCTTCGTCTTCTCAGCCCACAGAGGACCCCTCCCGGCGGGCAGAGCTGGAGAGTCTAGGTGGCACAGCTGATGCTGCTCGTGCCAGACTAGCAGAGGAACAGAAGCTGAAGAAGCTGCGTCCACAGTACAGTATTGAAGCCGAAACGCATTCACAGAGTCTGGAGAAGACCTTGATGACACCACTGTCCAGAGGGAGTCAGGATGCCTGGGATAAACTGCAGCCCAGCTCCAGACCTCTGCGGATTAAAGATCTTGATTTCTCAGATCTGATGGAGGAGGAGGATATTGATGTGCTGGATATAGACACTTTTGATACTGGCCTGTCTAATGTTATACCTCCACCTCCTCCTCCAGTGCCAGGACTGGGTTCTGCTCCTCCTCCTCCACCACCACCTCCTCCCCCTGGACCTGCTGGTCTGTTTTCACCACCTCCACCTCCTCCTCCTCCTCCACCTGGATTTGCTGGTTTGGCTTCACCTCCTCCTCCACCTCCTCCTCCTGGAGGTTTGAGTATTCCTCCACCTCCCGGACTCTTTACCACGTCCCCGTCACAGGGTTTGGATCCTGCTTTTGTGAAGAAACGGAAAACAGTAAAGTTGTTCTGGAAGGAACTGAAGCAATCTGACAGCCCCAGAAAGTGCAAGTTTGGGAGGGGAACAGTGTGGGCTTCACTTGATAAAGTGGATGTCGATACAGCCAAGCTGGAGCACCTTTTTGAGTCCAAAGGAAAGGATCTTCCAGTAGCAAAG
Seq C2 exon
AAAGGTGCTGAGGTGAAGAAAGCAGCAATTTCAGTGCTTGATCCTAAGAGAAGCAATGCCATCAACATCGGCATGACTGTATTACCTGCTATACATGTGATCAAAAGTGCCATCCTCACCTTTGACGAGTTTGCCATCAGTAAAGAAGGCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.828 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(16.8=19.7)
C2:
PF0218118=FH2=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTAGTGGTCAGGAGTCTCAAGG
R:
CTCGATGCCTTCTTTACTGATGG
Band lengths:
246-1187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]