MmuEX6037922 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105331642-105334802:-
Coord C1 exon
chr8:105334687-105334802
Coord A exon
chr8:105332910-105333604
Coord C2 exon
chr8:105331642-105332192
Length
695 bp
Sequences
Splice sites
3' ss Seq
GTCACTTTATTTTTTCCTAGGCA
3' ss Score
8.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAGACGGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCGGAGACGCTGGCTGGAGCCACGGTAGATGACACTGATGGATCATCAG
Seq A exon
GCACAAGGGAACTGTGGGACTCCCCAGAGCCAGCCTCTGCACCCAGGACACCCCAGAGCCCTGTTTCCCGAATCCTGCTGCGCACCCAGCGGAGTCTTGAGCCAGAGCCCAAGAAGCCAGTGTCACCACCAAGCCCTAAGGCTGAGCCTATCCAGGAGCCTCCCACCTGTGTCCCCAAGCTCTGCATTGGGGACTTGGACTTCTCAGACCTAGGGGAGGATGAAGACCAGGACACACTGAATGTGGAATCTGTGGAGGCTGGAAAAGCATCTCCCTTCCTGTCATCTCTATCGCCCTCACTCTCTGGGGGTCCCCCTCCTCCGCCCCCACCTCCTCCACCCATCACAGGCTCCTGCCCCCCACCTCCGCCCCCACCTCTCCCCCCACCCGCCACAGGCTCCTGCCCTCCACCTCCGCCCCCACCTCCCCCACCCATCATAGGCTCCTGCCCACCGCCTCCACCCCTGGCTGCTCCTTTTACCCACTCAGCACTTGACGGCCCAAGGCACCCCACCAAAAGGAAGACAGTAAAACTTTTCTGGCGGGAACTAAAGCTGACTGGGGGCCCTGGGTGCTCTAGAAGCCGCTTTGGGCCTTGTCCTACCCTGTGGGCCTCGCTGGAACCCGTCTCGGTGGACACAGCCCGCCTGGAACACCTATTTGAGTCCAGAGCCAAGGATGTGCTACCAACCAAG
Seq C2 exon
AAAGCTGGTGAGGGCCGCCGGACAATGACCGTAGTGCTGGACCCCAAGCGCAGCAATGCCATCAACATTGGCCTAACCACTCTGCCACCCGTGCACGTCATCAAGGCTGCCCTGCTCAACTTCGATGAGTTTGCTGTCAGCAAAGATGGCATTGAGGTGGGGCTACCCTAAGGATAAGGAGGGAAATGCTGGCTCTTCCCTTTGGTCAGTAGAGCTTCCAGTCCTTCCAGCGGTGGGCACAGGCCTGCCATTTCTGTAAAGCATTCTCCCAAACTCAGGGCTCCCCTGGAAGGCCTAGGGCGGGGTAAGAAGACGAGGTCAGGCCTCAGGTCAGTCCTGAGCCTCTGGGGCGGTGGCTGCACCTTCAGAAACTGCTGACAATGATGCCCACGGAGGAAGAGCGGCAGAAGATTGAGGAAGCCCAGCTGGCTAACCCCGATGTACCCCTCGGCCCCGCTGAGAATTTCCTGATGACGCTTGCTTCCATTGGAGGCCTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'20-25,'20-24,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=0.853 C2=0.221
Domain overlap (PFAM):
C1:
NO
A:
PF0218118=FH2=PU(17.7=28.4)
C2:
PF0218118=FH2=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACGGTAGATGACACTGA
R:
TGACCTCGTCTTCTTACCCCG
Band lengths:
353-1048
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types