MmuEX6037914 @ mm10
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105338030-105338960:-
Coord C1 exon
chr8:105338854-105338960
Coord A exon
chr8:105338402-105338466
Coord C2 exon
chr8:105338030-105338097
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACATGGCTACTTGCTTTTAGCAA
3' ss Score
4.34
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTGGAGGACTGTGCATTGCAAGTGTCTCCCTCCGGATACTACCTGGACCCGGAGCTGTCCCTAGAAGAACAGCGGGAGATGCTGGAGGGTTTCTATGAAGAGATCAG
Seq A exon
CAAAGGGCGGAAGCCCACGTTAATCCTGCGGACCCAGCTCTCCGTGAGGGTCAATGCTATCTTGG
Seq C2 exon
AAAAGCTGTATGGCTCCAGTGGCCCCGAGCTCCGCCGATCTCTCTTCTCATTAAAGCAGATATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'6-5,'6-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGACTGTGCATTGCAA
R:
TCTGCTTTAATGAGAAGAGAGATCGG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types