BtaEX0014632 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34984421-34985319:-
Coord C1 exon
chr18:34985213-34985319
Coord A exon
chr18:34984750-34984814
Coord C2 exon
chr18:34984421-34984488
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTGGGCTACTTGATTCCAGCAA
3' ss Score
3.38
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTCGAGGACTGTGCTCTGCAAGTGTCTCCATCTGGATATTACCTGGACCCTGAGCTGTCCCTGGAAGAGCAGCGGGAGATGTTGGAGGGCTTCTTTGAAGAGATCAG
Seq A exon
CAAAGGGCGGAAGCCTACTCTGATCCTGCGAACCCAGCTCTCCGTGAGGGTCAATGCCATCTTAG
Seq C2 exon
AAAAGTTGTATGGCTCCAGTGGCCCTGAGCTCCGCCGCTCCCTCTTCTCACTAAAGCAGATCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTGTGCTCTGCAAGTG
R:
AGATCTGCTTTAGTGAGAAGAGGGA
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development