DreEX6006127 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34281853-34309198:+
Coord C1 exon
chr7:34281853-34281959
Coord A exon
chr7:34288174-34288238
Coord C2 exon
chr7:34309131-34309198
Length
65 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTATTTCTCTACAGAAA
3' ss Score
10.44
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTTGAAGAGTGTGCACTGCAGCTGGCTTCCAATGGAAACTACCTGGATCTGGATTCTTCACTTGCTGAACAGAGAGATGATGTGGAGCAGCTCTATGATGACGTGGA
Seq A exon
AAAAGGAAAAAAGCCCATCTTGATTCTCCGTACGCAGCTTTCAGTGCGAGTTCATTCTATTCTAG
Seq C2 exon
AAAAATTGTACAACTCTCATGGTCCTGAGCTTCGACGATCCTTGTTTTCTTTAAAGCAGCTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'2-5,'2-2,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAGTGTGCACTGCAGC
R:
AGCTGCTTTAAAGAAAACAAGGATCG
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]