Special

GgaINT0024824 @ galGal3

Intron Retention

Gene
Description
NA
Coordinates
chr11:1333034-1333456:+
Coord C1 exon
chr11:1333034-1333208
Coord A exon
chr11:1333209-1333279
Coord C2 exon
chr11:1333280-1333456
Length
71 bp
Sequences
Splice sites
5' ss Seq
CTAGGGATG
5' ss Score
-15
3' ss Seq
ATCCCCATGTTCCCATGCAGGGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
ACCGAGAAGTTCTCTGGCATCACCGAGGCATCACCACCCGCCGTGGTGTCAGCCAGCCCCACGCAGCAGGAGCAGGCAGAGGTGGGCCACGAGAGCATGAAGAGCGTCCTGAGCTCGCCCACGGATGTCCCTGCCCGCCGCAGTCGGGGTGGCCGCGGTAGGAGCACATCACCTA
Seq A exon
GGGATGGGGTGACATTGGGGTGGCCCCAGGGAGCGCCCAGTTGATGCCAGCATCCCCATGTTCCCATGCAG
Seq C2 exon
GGACGGGGCTCACCACTCCAAGCCAGGGCTCCCCAGCCCAGGAGGACGTTCCCAGCTCACCCGACGACGCCTCAGATGAGATCATGGACCGCCTGGTGAAGTCGGTGACGCACAGTGCCAACCCCCGGCCCTGCCCCAGCCGGGAGCGCAGGAGGTCCCGCGGCAACAGGAAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.966 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCATGAAGAGCGTCCTGAG
R:
TGATCTCATCTGAGGCGTCGT
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]