Special

MmuINT0064475 @ mm10

Intron Retention

Gene
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105329569-105330009:-
Coord C1 exon
chr8:105329847-105330009
Coord A exon
chr8:105329770-105329846
Coord C2 exon
chr8:105329569-105329769
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCCTCTGCTCTCTCCCTTAGGTA
3' ss Score
13.86
Exon sequences
Seq C1 exon
ACAGAGAAGTTCTCAGGTGTGGCTGGGGAGGCCCCCAATAACCTGTCTGTCCCAGTGGCTGTGGGCAGCGGGCCAGGTCAGGGTGATACTGACAATCATGCCAGCATGAAGAGCCTGCTTACCAGCAGGCCGGAAGATGCCACACACAGCCGACGCAGCAGAG
Seq A exon
GTAGGGCTCACAGCTGCTGCTAGGGGAATGTGTTCTAAAGCCACCTTTGTCTGATTTCCCTCTGCTCTCTCCCTTAG
Seq C2 exon
GTATGGTCCAGAGCAGTTCCCCCGTCTCACACACAGCAGTGGGGCCCTCCGCTGCATCCCCTGAGGAGACTGCAGCCTCCGGCTTACCCACCGACACGTCAGATGAGATAATGGACCTGCTGGTGCAGTCAGTTACCAAGAGCGGTCCTAGAGCCTTAGCTGCTCGGGAGAGGAAGCGCTCTCGTGGCAACCGAAAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778:ENSMUST00000014922:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.909 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTCTCAGGTGTGGCTGG
R:
GGGGAACTGCTCTGGACCATA
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types